PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046253m
Common NameCISIN_1g046253mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 242aa    MW: 26973.8 Da    PI: 9.4207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046253mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-111622282794
                        ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                 B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         +k  e++ +t++d++g+ + + ++++  s+ yvlt+GW +F + +gL ++ +v++ + ++ ++++l++
  orange1.1g046253m 162 VLK--EGIPVTVYDLDGNAFPMSFKVWSESKYYVLTSGWTKFHQNKGLADKHVVTLWMFRHaETQKLCF 228
                        333..55679**************99****************************998666556666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-15124228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16125233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-12126230No hitNo description
PfamPF023624.6E-9159230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNQNSMANGN NYPEELKKQG AAALALTCIK NRRLDKKAKA NLHKYLKTTY LGKSISVQVN  60
NNAAEINTSS SSPSSTAEAA NLNLVEDNGA HGDGYVDGDD DYKPPDIPPV RNLNGVIGNC  120
SKPLEKKLTN TDLKVNQCRL SMNRGKVLEL LVPLLNEEEY RVLKEGIPVT VYDLDGNAFP  180
MSFKVWSESK YYVLTSGWTK FHQNKGLADK HVVTLWMFRH AETQKLCFVI SWREVIAKKI  240
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451248.21e-176B3 domain-containing protein At1g20600
TrEMBLA0A067FGG41e-179A0A067FGG4_CITSI; Uncharacterized protein
TrEMBLV4TV951e-179V4TV95_9ROSI; Uncharacterized protein
STRINGXP_006451248.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-20B3 family protein