PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046280m
Common NameCISIN_1g046280mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 267aa    MW: 29165.7 Da    PI: 5.2604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046280mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-184290355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + GVr+++ +gr++AeIrdp +   + r++lg+f+tae+Aa a+++a+++++g
  orange1.1g046280m 42 FLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEDAALAYDRAARSMRG 90
                       56******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.83E-284197No hitNo description
PROSITE profilePS5103220.5474198IPR001471AP2/ERF domain
SMARTSM003804.7E-3441104IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-204299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-294298IPR001471AP2/ERF domain
PRINTSPR003676.0E-84253IPR001471AP2/ERF domain
PfamPF008477.8E-114490IPR001471AP2/ERF domain
PRINTSPR003676.0E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFSNLRTNS SSVPSPTKTK RKQQKQQQQQ QQNHMRQDEI RFLGVRRRPW GRYAAEIRDP  60
ATKERHWLGT FDTAEDAALA YDRAARSMRG SKARTNFVYS DMPAGSSVTS IISPDHYQPP  120
QHDDVVSSLL AVTAAAAADT NTNNNNINQL LNFSDQFSAE TISGSTTYKP ITSVMDAADQ  180
ADDHQTYTNG DFCELPPLPP DASSSSCYYY NYHDPAAAVA GLMGNSDLGF GAWNDQTTGF  240
DYSSSSSFST TTTGVQYFMQ GAAAAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-204297359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487611.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A067DB380.0A0A067DB38_CITSI; Uncharacterized protein
STRINGXP_006487611.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-33ERF family protein