PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046309m
Common NameCISIN_1g046309mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 464aa    MW: 51770.2 Da    PI: 6.5655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046309mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-16143188147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  orange1.1g046309m 143 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 188
                        899*****************************.***********996 PP
2Myb_DNA-binding56.28e-18195238146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  orange1.1g046309m 195 RRAFTEEEEERLMHAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 238
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.609138189IPR017930Myb domain
SMARTSM007173.3E-14142191IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-28143236IPR009057Homeodomain-like
PfamPF002498.2E-16143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-25144196IPR009057Homeodomain-like
CDDcd001674.69E-13146187No hitNo description
PROSITE profilePS5129427.342190244IPR017930Myb domain
SMARTSM007172.1E-14194242IPR001005SANT/Myb domain
PfamPF002491.3E-14195237IPR001005SANT/Myb domain
CDDcd001671.17E-11197237No hitNo description
Gene3DG3DSA:1.10.10.609.7E-21197243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNGLTCNYSP TYSSSLSLSM DVYADMGMGS LSLNNPSYGG AVSEENERAW GFPFMGSCSS  60
NDKPGNNFEE RRQCDIIDVN DNNNNVVRKS KGSDCSDGCG EKSETLIQYQ CDINLNEEFN  120
PNENSVGPSE KDSDGGQTKT CARGHWRPAE DTKLKELVAL YGPQNWNLIA EKLEGRSGKS  180
CRLRWFNQLD PRINRRAFTE EEEERLMHAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM  240
ARKYREQSSA YRRRKLSQSV NRIMDDMPSF VANDAAAGRI IEPQPYCSSI GSVNGGFYHF  300
TYGNFNGAAG VGLDYHLNGS PYLLLGQQEV ISSSSNQVHH SGFCAQAQQQ TPCDFFSGPK  360
SNDMMGMFSH IRSWDRPMDE VTRNISSSSA SFNLHNCNNP QYLMAMQQSN SNIHNPDSFF  420
DFTASKTQVS PTEPSSSVTG NRVASHFDTI PPRFIDFLGV GAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-341432437107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387159.20.0transcription factor CSA-like
RefseqXP_024042187.10.0transcription factor CSA
TrEMBLA0A067GW840.0A0A067GW84_CITSI; Uncharacterized protein
STRINGXP_006438712.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-78myb domain protein 105