PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046416m
Common NameCISIN_1g046416mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 387aa    MW: 40690 Da    PI: 9.1103
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046416mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.25e-4386162177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +CqvegC++dls+ak y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++
  orange1.1g046416m  86 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPT 162
                        6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-3580148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.36884161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-4185164IPR004333Transcription factor, SBP-box
PfamPF031108.4E-3387160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MELGSDYLAE SGGGSGSGSG LSSAEPSLNG LKFGKKIYFE DVGTAGAPFP GSGSSSGSGS  60
GSGSGSGRKV RGGGGGMVTS GQQPPRCQVE GCKVDLSDAK AYYSRHKVCG MHSKSPVVTV  120
AGLEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PTSGPFLGTR YGRLSSSVIE  180
NSSQGGGFLI DFSAYQMVGG RDGWPVTSVS KQVSGNQTTV TARHLPQPLW QNHSQDPPPD  240
RYLQCSTAGT GFSGPGIPCG GCFTGVADSN CALSLLSNQP WGSKNPTPGH GVGDLMHAHT  300
KSVTQPVSPH GAAINQYPNM SWGFKGNAAG SSSHQMAPQL GLAPTSVPIN SQFSGELESS  360
QQSRQYMKLQ HSRDYDDSNQ QIHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31871601184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.114260.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5022370.0FJ502237.1 Poncirus trifoliata squamosa promoter-binding protein (SPL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492889.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A067E8H00.0A0A067E8H0_CITSI; Uncharacterized protein
STRINGXP_006492888.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-66squamosa promoter binding protein-like 9