PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046479m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26118 Da    PI: 9.6144
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       +ri+nk+nrq tf+kRr g+lKKA+ELS LCdaeva+iifss+g l+e+ 
  orange1.1g046479m  9 ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFG 58
                       69**********************************************95 PP
2K-box76.37.9e-26811747100
              K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + ++ + e l +e+ +L++  e+L+r+qRh+lGedL++L +keLq+Le+qL+k l+  R++K++l+++++e+lqkk ++l+eenk+L+ kl
  orange1.1g046479m  81 IDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172
                        4566667788999****************************************************************************999 PP

              K-box  99 ee 100
                        ee
  orange1.1g046479m 173 EE 174
                        86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.847161IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.78E-35278No hitNo description
SuperFamilySSF554551.44E-29284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.76788178IPR002487Transcription factor, K-box
PfamPF014864.6E-2289172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKMVLER IQNKINRQAT FAKRRDGLLK KAYELSLLCD AEVALIIFSS HGMLFEFGSN  60
FGMAKILERY RQYCYTSQEP IDINQLEPEA LFREILRLRA LRESLERSQR HFLGEDLGTL  120
GVKELQKLEK QLDKTLSLSR QRKTDLMRQH LETLQKKAHD LEEENKQLKF KLEEAIRASG  180
ADPNIAVITN HLRVHPAQQM GYNAHDRANI GAASDFVSGA ISPAQGWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20173172MEF2C
5f28_B3e-20173172MEF2C
5f28_C3e-20173172MEF2C
5f28_D3e-20173172MEF2C
6byy_A4e-20173172MEF2 CHIMERA
6byy_B4e-20173172MEF2 CHIMERA
6byy_C4e-20173172MEF2 CHIMERA
6byy_D4e-20173172MEF2 CHIMERA
6bz1_A4e-20173172MEF2 CHIMERA
6bz1_B4e-20173172MEF2 CHIMERA
6bz1_C4e-20173172MEF2 CHIMERA
6bz1_D4e-20173172MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1219715e-47HM121971.1 Citrus sinensis AGL62 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490461.11e-168MADS-box transcription factor 6
SwissprotQ8LLR12e-69MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2H5NMK91e-165A0A2H5NMK9_CITUN; Uncharacterized protein
STRINGXP_006490461.11e-168(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2956522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-46AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]