PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046538m
Common NameCISIN_1g046538mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 405aa    MW: 43934.6 Da    PI: 8.0908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046538mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-174897255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  orange1.1g046538m 48 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 97
                       59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-114897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2948104IPR001471AP2/ERF domain
PROSITE profilePS5103222.14248105IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2148105IPR016177DNA-binding domain
SMARTSM003803.7E-3248111IPR001471AP2/ERF domain
CDDcd000181.22E-2948104No hitNo description
PRINTSPR003672.4E-94960IPR001471AP2/ERF domain
PRINTSPR003672.4E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEEALRRLNG MPQMPESETS KKNTSTTSNS NKRSLKETGG NVSGTTMRYR GVRRRPWGRY  60
AAEIRDPQSK ERRWLGTFDT AEEAACAYDC AARAMRGMKA RTNFVYPAVA TEAPPHHFIP  120
PFNFSKQSQP SVRAFHTARP FMNPPSFANP VPEEKNSALN LLLLRDLLSN SSSSSSSSSF  180
YTPTTAAAAP PPPHQPLYSF DQQLPFISNN SSSSPTTTSA SFSSGTGAFP MNPTYNHQQQ  240
GFHNTTGTTA ATVVSSTNAT KLVDDHMEFF PQEPANSGLL QEIIQGFFPE PTSKSNKSCD  300
DDFTKPSSND YSTQAMNSIT APLVSDMSVN MKRASGIKVE PSAVGGFYFD SQGQVGGVGG  360
GGQPSLQNEF GNFNEVITGS QFQSQAFHQY PELMSAFTAR VQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1935104171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957155.10.0ethylene-responsive transcription factor ESR2-like
TrEMBLA0A067GU840.0A0A067GU84_CITSI; Uncharacterized protein
STRINGXP_006484323.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like