PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046570m

Common Name

CISIN_1g046570mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 256aa MW: 28454.6 Da PI: 6.7811

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046570m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + orange1.1g046570m 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 57 799***************************.*********985 PP
2	Myb_DNA-binding	54.5	2.7e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ orange1.1g046570m 66 PFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.884	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-30	9	105	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-16	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-17	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-25	13	65	IPR009057	Homeodomain-like
CDD	cd00167	2.28E-14	14	56	No hit	No description
SMART	SM00717	1.5E-14	63	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.598	63	113	IPR017930	Myb domain
CDD	cd00167	1.30E-11	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-23	66	112	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-14	66	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
TNSNSNNNDR IKGSWSPQED ATLIKLVEQH GPRNWSMISS GIPGRSGKSC RLRWCNQLSP 60 TVQHRPFTPA EDSIIIQAHA VHGNKWATIA RSLPGRTDNA IKNHWNSTLR RKRMAELSSA 120 SSESNSVMMK RPGFENNISS AESDSDSGGI KRQCLRVSQE HDSYNVEAGI VGPETFGGEK 180 VEDEEKLKIN KECDGDGDGG KIEKEKGEDR CTVDMEMEES CLFTIMRRMI AEEVRNQFDG 240 LRAQAGLRFS VQKDT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-38	11	112	3	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435772.1	1e-170	transcription factor MYB73
Refseq	XP_006486296.1	1e-170	transcription factor MYB73-like
TrEMBL	A0A067FND1	0.0	A0A067FND1_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006486296.1	1e-170	(Citrus sinensis)
STRING	XP_006435772.1	1e-170	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-53	myb domain protein 73

Link Out ? help Back to Top
Phytozome	orange1.1g046570m