PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046611m
Common NameCISIN_1g046611mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 127aa    MW: 14437.3 Da    PI: 7.554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046611mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.11.6e-1449108164
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 
                        +fYneYAk++GFsvr++ s+ks ++g+i+++++vCskeg +++e  +   ++r+  + r gCk 
  orange1.1g046611m  49 EFYNEYAKKAGFSVRINFSRKS-HTGKIVRKEYVCSKEGATTKEVVE---KKRRCGKVREGCKS 108
                        6******************999.8888**************999766...77788889999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.7E-1249108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNDIGVDTGE SYEEAMQEQR DKVYKPVVIP HDHMPRLGQE IVLLDDVHEF YNEYAKKAGF  60
SVRINFSRKS HTGKIVRKEY VCSKEGATTK EVVEKKRRCG KVREGCKSVG LTQFDPTAYI  120
QHAEDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389930.15e-41protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D2G37e-89A0A067D2G3_CITSI; Uncharacterized protein
STRINGXP_006438076.12e-86(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3343422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-10FAR1 family protein