PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046632m

Common Name

CISIN_1g046632mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 225aa MW: 26050.3 Da PI: 9.7181

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046632m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92	9.7e-29	9	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rF Ptdee+v +yL +kv+g++++++ vi+++d+y+ e ++ +++e+ +yfF++ +kk+++g + +r t+ g+W+++ +++ orange1.1g046632m 9 LPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALYFFTTLKKKTENGVQVERETNCGTWRSQKNTRIY 100 79**************************999*******99985445688899**********************99887766 PP NAM 93 lsk.........kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ k++++g ++ +++ +g++ k +Wvmheyrl orange1.1g046632m 101 RHRynktgdkiiKKQHIGSRRNFTYVpkEGSRGGVIKGTWVMHEYRL 147 6668888888887788******5445555556*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-31	5	171	IPR003441	NAC domain
PROSITE profile	PS51005	32.398	9	171	IPR003441	NAC domain
Pfam	PF02365	2.3E-20	10	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MERHQLPALP PGYRFAPTDE EIVAHYLYNK VHGRPVSTSA VIDNIDVYRD ENVWIRIFER 60 TGENALYFFT TLKKKTENGV QVERETNCGT WRSQKNTRIY RHRYNKTGDK IIKKQHIGSR 120 RNFTYVPKEG SRGGVIKGTW VMHEYRLDGI SISNARINNI GDYVICRIKK KQPKREELMS 180 GDNDGPVRNS MSGLVQPPPS NNTSEWFNVQ DLEKILFDSS TANDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	8	172	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	8	172	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	8	172	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	8	172	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	8	172	19	169	NAC domain-containing protein 19
3swm_B	2e-19	8	172	19	169	NAC domain-containing protein 19
3swm_C	2e-19	8	172	19	169	NAC domain-containing protein 19
3swm_D	2e-19	8	172	19	169	NAC domain-containing protein 19
3swp_A	2e-19	8	172	19	169	NAC domain-containing protein 19
3swp_B	2e-19	8	172	19	169	NAC domain-containing protein 19
3swp_C	2e-19	8	172	19	169	NAC domain-containing protein 19
3swp_D	2e-19	8	172	19	169	NAC domain-containing protein 19
4dul_A	2e-19	8	172	16	166	NAC domain-containing protein 19
4dul_B	2e-19	8	172	16	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475540.1	1e-169	NAC domain-containing protein 2-like
Refseq	XP_024044707.1	1e-169	NAC domain-containing protein 2
TrEMBL	A0A067F2L0	1e-168	A0A067F2L0_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5NR64	1e-167	A0A2H5NR64_CITUN; Uncharacterized protein
STRING	XP_006475540.1	1e-168	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20060	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-24	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	orange1.1g046632m