PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046677m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 203aa    MW: 23526.7 Da    PI: 7.7284
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046677mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.45.6e-077581263
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                        NR +A r  +RKk +i  Le k+ +L +  ++L  +l  l+ e+ +l++e+
  orange1.1g046677m  7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK 58
                       6**********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.41E-7454No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-7454No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MCHRIVANRM SAIRAKERKK LYIYMLEHKM HNLRSNSTTL TAQLTLLETE SNSLDAEKAV  60
LKHRLEITLQ KIHLQDSLND QIRSEIQHMK TVLGEKIPNL GALFGLSRKS SYQDMNAPIG  120
AVAQLLPELQ LQNSYLDQQP QYDFQQQPYL GLNNFGFQNE QGECSQLQQQ LLYQENPPPH  180
DHYQMQNEQA QARQLQQQQP RF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015382869.21e-143probable transcription factor PosF21
SwissprotQ040882e-22POF21_ARATH; Probable transcription factor PosF21
TrEMBLV4UAJ42e-91V4UAJ4_9ROSI; Uncharacterized protein
STRINGXP_006447900.13e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2307833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.61e-17bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]