PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046939m
Common NameCISIN_1g046939mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 171aa    MW: 18739.8 Da    PI: 6.1341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046939mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142848323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C  C ++F +++ L +H +tH
  orange1.1g046939m 28 CAVCQQVFFSPEALINHYQTH 48
                       *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSGNGHPDGF SLAPPPHRSN SNPVQEHCAV CQQVFFSPEA LINHYQTHIR GEELMNFQNN  60
FIRVRNQAAL EAQRLFGFDI PRQNQHLHPP SFSLPPIAMR RIQSFPPPTN DGTVISAARA  120
RAAVANQLNQ PAAAAIPNQI DLNSDYNEEN NNPSDGIDDG SINLDLTLGR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067EJK21e-120A0A067EJK2_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q7I91e-120A0A2H5Q7I9_CITUN; Uncharacterized protein