PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046940m
Common NameCISIN_1g046940mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 223aa    MW: 25345.9 Da    PI: 10.3893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046940mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.74e-35411601128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp G+rF+P+ +el+++yL kk++g++l++ ++i+e+d+y ++P++Lp +++k ++  e yfF++  k        +r t+sgyWk tg+d 
  orange1.1g046940m  41 LPLGYRFSPRGNELITHYLIKKISGQQLPA-NIIREIDLYAFDPHQLPiSEFKYGKPdEAYFFTRPGK--------RRRTSSGYWKPTGRDL 123
                        699***************************.89***************756555444499***99865........566899********** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ls +++ vg k++L+fykg+ap+g kt Wv+he+r+
  orange1.1g046940m 124 PILS-GKAIVGFKRILIFYKGKAPRGIKTPWVVHEFRV 160
                        ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3937192IPR003441NAC domain
PROSITE profilePS5100539.72641192IPR003441NAC domain
PfamPF023651.2E-1742160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALLDIVSYS QQTSATRNNN LSAYSISAGR GSNQDDEQYN LPLGYRFSPR GNELITHYLI  60
KKISGQQLPA NIIREIDLYA FDPHQLPISE FKYGKPDEAY FFTRPGKRRR TSSGYWKPTG  120
RDLPILSGKA IVGFKRILIF YKGKAPRGIK TPWVVHEFRV NPLYFSAIRR NKLDEDVNAK  180
VESYIACKIR YKRQRQSDKC GTSSKTQKAN QSAAESPLKE TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-333616010140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437965.21e-158NAC domain-containing protein 2
TrEMBLA0A067GQ051e-164A0A067GQ05_CITSI; Uncharacterized protein
STRINGXP_006437965.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-35NAC-like, activated by AP3/PI