PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047101m
Common NameCISIN_1g047101mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 345aa    MW: 38735.2 Da    PI: 8.3189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047101mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEd++l+d++k++G g+W++ +++  + R++k+c++rw +yl
  orange1.1g047101m 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61
                       89********************************************97 PP
2Myb_DNA-binding51.72e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++  E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++
  orange1.1g047101m  67 RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.794965IPR017930Myb domain
SuperFamilySSF466892.92E-3011108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-161461IPR001005SANT/Myb domain
CDDcd001672.08E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2665116IPR009057Homeodomain-like
SMARTSM007175.1E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129419.69666116IPR017930Myb domain
PfamPF002494.2E-1567111IPR001005SANT/Myb domain
CDDcd001674.61E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRSPCSDTN GLKRGPWTPE EDQKLLDYIK KHGHGSWRSL PEKADLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLHEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HIKKRLARMG  120
IDPMTHRPKI PSLASADGDP KKASNLSHMA QWENARLEAE ARLVRESKPK QNDQQKSEGP  180
VSVSANKQLN RMATTYTSTR PRCLDILKAW ESTICNINGS IISFGDGSYL ESPPSILQFS  240
EDRQQAAAMS SLENMNKNLD FVYDAGGSAG DAWNIVGSSS VNNAGDENFI EGFSCDYHMN  300
NNNNNNNNNI GGDQESSNNY CWNELISVVE CRQPNTTPFY TRGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477596.10.0transcription factor MYB16-like
TrEMBLA0A067EK160.0A0A067EK16_CITSI; Uncharacterized protein
STRINGXP_006477596.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3315122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-98myb domain protein 16