PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047118m
Common NameCISIN_1g047118mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 231aa    MW: 26256.1 Da    PI: 8.954
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047118mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.55.8e-3518116198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aCaaCk++r+kC++dC la+yfpa+++k+f++vhk+FG+snv+k+++++++ee r+++++sl++eA +r++dPv+G +g ++++ ++l+  +
  orange1.1g047118m  18 ACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTKIVQNANDEEsRQKVVDSLIWEAFWRQKDPVSGPYGEYQRVCEELKLYR 109
                        7************************************************77776**********************************9998 PP

             DUF260  92 aelallk 98 
                        +++ +++
  orange1.1g047118m 110 SQTLMQN 116
                        8876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05517119IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3218113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMQRNNNNSS TTSSVQSACA ACKHQRKKCS EDCKLARYFP ANRSKEFQAV HKVFGVSNVT  60
KIVQNANDEE SRQKVVDSLI WEAFWRQKDP VSGPYGEYQR VCEELKLYRS QTLMQNHNHR  120
NQNHQLVQLP GQGGMIYRSS SQPLMGWNNG MNTNNGISVS GNEQLDYNNH DNGNNSIVDL  180
DTYSFASHFV QSPKNLKQER EVGTVVIPLQ QQQQQRQQPS INSGFSQHHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-18996288LOB family transfactor Ramosa2.1
5ly0_B2e-18996288LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950727.11e-170LOB domain-containing protein 2
TrEMBLA0A067DW221e-171A0A067DW22_CITSI; Uncharacterized protein
STRINGXP_006469134.11e-169(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-44LOB domain-containing protein 2