PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047491m
Common NameCISIN_1g047491mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 207aa    MW: 22288.3 Da    PI: 7.1477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047491mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.68.9e-43421411100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a
  orange1.1g047491m  42 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQA 133
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  orange1.1g047491m 134 QLAKAQAE 141
                        ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.06841142IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-4342139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENYEAAATR NPSKVTSSRA GSSSPPPISA NSSAPPPVIM SPCAACKILR RRCADKCVLA  60
PYFPPTEPAK FTIAHRVFGA SNIIKFLQEL PESQRADAVS SMVYEASARI RDPVYGCAGA  120
ICQLQKQVSE LQAQLAKAQA EVVNMQCQQA NLVALLYKEM GKSPQPNSPQ SVDHFITSPE  180
SPEANPCSFF EDNNLSGSLW EPALWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-43371496118LOB family transfactor Ramosa2.1
5ly0_B7e-43371496118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488170.11e-150LOB domain-containing protein 1-like
SwissprotQ9SK083e-77LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A067G4031e-149A0A067G403_CITSI; Uncharacterized protein
STRINGXP_006488170.11e-150(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.15e-72LOB domain-containing protein 11