PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047495m
Common NameCISIN_1g047495mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 232aa    MW: 26845.2 Da    PI: 9.7
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047495mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.91.5e-37201222134
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 
                        ++k+drhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++ +aikel +++ + +                       
  orange1.1g047495m  20 PVKRDRHSKICTAQGFRDRRVRLSIEIAREFFDLQDMLGFDKASQTLEWLFNKSRKAIKELIELKRPCN----------------------- 88 
                        579*************************************************************55555....................... PP

                TCP  94 aakskksqksaasalnlakesrakarararertrekmrikn 134
                                +s++ + +lak+sr +ararar+rtrekm +k 
  orange1.1g047495m  89 -------GTSKQLMEKLAKKSRDQARARARQRTREKMLKKF 122
                        .......455667799*********************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-342185IPR005333Transcription factor, TCP
PROSITE profilePS5136935.0232280IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.012100117IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
VNREHYDHPS SFIRNEKPVP VKRDRHSKIC TAQGFRDRRV RLSIEIAREF FDLQDMLGFD  60
KASQTLEWLF NKSRKAIKEL IELKRPCNGT SKQLMEKLAK KSRDQARARA RQRTREKMLK  120
KFADTTPQIS TQIKACQESS SYVVSHDQVQ EPCSSTLACQ TQDNQAPTDR NQNPSSNFAH  180
DQQNLEISKD TISCNTSNYN FNLPQNWDIV SAMPHQYTVC RAITKHESLN W*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955808.11e-156transcription factor CYCLOIDEA-like
TrEMBLA0A067DGN21e-173A0A067DGN2_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006430819.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-31TCP family protein