PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047550m
Common NameCISIN_1g047550mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 396aa    MW: 44021 Da    PI: 8.2502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047550mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16119164147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  orange1.1g047550m 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 164
                        899*****************************.***********996 PP
2Myb_DNA-binding51.32.6e-16172214246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++++E+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  orange1.1g047550m 172 RAFSEDEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 214
                        689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.062114165IPR017930Myb domain
SMARTSM007172.7E-14118167IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-27119212IPR009057Homeodomain-like
PfamPF002497.9E-16119164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-25120172IPR009057Homeodomain-like
CDDcd001672.82E-13122163No hitNo description
PROSITE profilePS5129425.968166220IPR017930Myb domain
SMARTSM007175.1E-13170218IPR001005SANT/Myb domain
PfamPF002497.7E-13172213IPR001005SANT/Myb domain
CDDcd001671.71E-10173213No hitNo description
Gene3DG3DSA:1.10.10.607.9E-20173219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTLQQFHNST SCHKRKMNSM TNHYKNTINA NAPTIDSSMD MFAAVAHMGS LSASPRKNSG  60
HIVTSQNICY CDSSDHQKSD LAAGGDSDNN NKVDESVDGY EDMEDVKKMD GGLSKVCSRG  120
HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR WFNQLDPRIN KRAFSEDEEE  180
RLMAAHRVYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY REQSSAYYRR RKFLNQVVDD  240
KKLEAAVAAN DLEPNINNVH DISSSSVSFL DSSSPRKPSF QAPIGYKSDD SFSQKSMQQW  300
GMIMKDGASF TVSSPYTHHH HHQQFLMPMQ HSSNYHLSAA AGFSDTMASA ASQVTITEPS  360
ASSSSSQSAA ENKRGTSHLE ATISPPFIDF LGVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-331192197107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037843.10.0transcription factor MYB54
SwissprotQ9SEZ43e-74MY105_ARATH; Transcription factor MYB105
TrEMBLA0A067FZ210.0A0A067FZ21_CITSI; Uncharacterized protein
STRINGXP_006431175.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-75myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]