PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g047562m

Common Name

CISIN_1g047562mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 247aa MW: 28263.8 Da PI: 6.7881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g047562m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	73	120	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + + Lr+llP ++K s ++ +Av+YIk+Lq orange1.1g047562m 73 RDIERHRRQEMSTLYRSLRSLLPLeY---LKGKRSMSDHMNEAVNYIKNLQ 120 679*******************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-14	66	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.83	67	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.55E-9	69	124	No hit	No description
SMART	SM00353	4.9E-4	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-10	73	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-8	73	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDYIPSLVFP FDRTDPHDDQ LPCQQQYHTA GQQNDNQLIF NPLEYGSDLK RPETTNIFAV 60 NDDNSKKMKI MRRDIERHRR QEMSTLYRSL RSLLPLEYLK GKRSMSDHMN EAVNYIKNLQ 120 NRIQKLSEKR DELRRLSNSS SSPYYSTTSE SECSQTHINL EDSVTVRPCL AGVEVAINTS 180 FRKGIPLSQV VALLAEEGLT VVNCISTKIN ERLLHNIESE VNDGGRNIDP FELQQKIMKL 240 TSPSSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440484.2	0.0	transcription factor bHLH36
TrEMBL	A0A067F8F6	0.0	A0A067F8F6_CITSI; Uncharacterized protein
STRING	XP_006477344.1	1e-180	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	6e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g047562m