PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g047580m

Common Name

CISIN_1g047580mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 135aa MW: 15239.5 Da PI: 9.2121

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g047580m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	42	126	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk vGF + + + ++s+r+g+i++r+f C+keg+r ++kk+ +r + + r gCka+++v+ke +gkw vtkle+ H+H+l orange1.1g047580m 42 YYDAYAKCVGFIIWVGNCHHSSRDGSIVSRRFLCNKEGFRVNNKKT---KRLEVRKPREGCKAMIMVRKEASGKWIVTKLETSHSHPL 126 8***************************************9999...88899999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-23	42	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MTEGGELIDF YDGRELIVNE ADRHAVRYIG MEFESEEAAM AYYDAYAKCV GFIIWVGNCH 60 HSSRDGSIVS RRFLCNKEGF RVNNKKTKRL EVRKPREGCK AMIMVRKEAS GKWIVTKLET 120 SHSHPLGIPA GKGR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028119173.1	7e-71	protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_028119174.1	6e-71	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Refseq	XP_028119175.1	6e-71	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SZL8	7e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067F5P5	3e-95	A0A067F5P5_CITSI; Uncharacterized protein
STRING	VIT_00s0174g00090.t01	6e-64	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25913	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-28	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g047580m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]