PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g047639m

Common Name

CISIN_1g047639mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 261aa MW: 30683.1 Da PI: 6.2357

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g047639m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.9	1.9e-27	4	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p+GfrF+Ptdeel+ + L+ kv+g++++l+ i e ++y++eP++L+ ++ e+e y ++ r++ + + + +g Wkat + k+ orange1.1g047639m 4 VPKGFRFNPTDEELI-QILESKVSGQQMPLHFSfIVERNLYELEPQQLQ-SL--PENERYCYCMRENDS------REVSGRGWWKATSHVKK 85 589**********.88*****8885445**********8.33..67899*98853......347789******* PP NAM 92 vlsk..kgel.....vglkktLvfy....kg.rapkgektdWvmheyrl 128 ++++ + +g k+ L+f+ +g +++++ kt+W+mhey+l orange1.1g047639m 86 IYATnnN--GscadvIGYKRPLTFHkfknNGrNRSNAIKTNWIMHEYTL 132 8551..245555*******6665342556778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-31	2	147	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	4	147	IPR003441	NAC domain
Pfam	PF02365	1.8E-17	5	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMMVPKGFRF NPTDEELIQI LESKVSGQQM PLHFSFIVER NLYELEPQQL QSLPENERYC 60 YCMRENDSRE VSGRGWWKAT SHVKKIYATN NNGSCADVIG YKRPLTFHKF KNNGRNRSNA 120 IKTNWIMHEY TLHSLSTDWT LCKIKYKGKP SVQEELEDIR NDYRLRVNND FEASSSSSIS 180 VTNMDMQQHL ADSVAEQQLQ RQQQQPQPLQ QLEQQQQYAS YDPFSTQTMS TGYDYFNDHD 240 HQLEQAHTSE QLFTTLWSWQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-17	2	154	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-17	2	154	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-17	2	154	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-17	2	154	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-17	2	154	18	174	NAC domain-containing protein 19
3swm_B	7e-17	2	154	18	174	NAC domain-containing protein 19
3swm_C	7e-17	2	154	18	174	NAC domain-containing protein 19
3swm_D	7e-17	2	154	18	174	NAC domain-containing protein 19
3swp_A	7e-17	2	154	18	174	NAC domain-containing protein 19
3swp_B	7e-17	2	154	18	174	NAC domain-containing protein 19
3swp_C	7e-17	2	154	18	174	NAC domain-containing protein 19
3swp_D	7e-17	2	154	18	174	NAC domain-containing protein 19
4dul_A	7e-17	2	154	15	171	NAC domain-containing protein 19
4dul_B	7e-17	2	154	15	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478770.1	1e-167	NAC domain-containing protein 83-like
Refseq	XP_024043270.1	1e-167	NAC domain-containing protein 83-like
TrEMBL	A0A067DWW2	0.0	A0A067DWW2_CITSI; Uncharacterized protein
STRING	XP_006478770.1	1e-166	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	8e-22	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	orange1.1g047639m