PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047657m
Common NameCISIN_1g047657mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 126aa    MW: 14795.9 Da    PI: 11.145
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047657mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.61.3e-101169260
               FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrt 60
                       +++eYA++ GF +rk++++++  +g+it+  +vCs+eg+r +++ + +++ r+ r+ trt
  orange1.1g047657m 11 CFREYARTKGFGIRKHNKRRN-VQGKITHIAWVCSREGFRYRKHLEnKRRIREARPMTRT 69
                       589************998888.8888**************99887724455567777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-81169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
EFGSEEEVEI CFREYARTKG FGIRKHNKRR NVQGKITHIA WVCSREGFRY RKHLENKRRI  60
REARPMTRTS HRRVTEPDLV AASSLQQVGV KPPQIHKFMV HRSGGYDKVG YSMKDVQNRL  120
DSKRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042873.12e-47protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D6414e-88A0A067D641_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006441659.18e-45(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1828423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-08FAR1-related sequence 5