PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047722m
Common NameCISIN_1g047722mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 139aa    MW: 14897.5 Da    PI: 9.8939
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047722mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-1981117135
               GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+  nC+t +Tp+WRrgp g+ktLCnaCG++yrk+++
  orange1.1g047722m  81 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117
                        55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-1177129IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-1379124No hitNo description
PfamPF003206.2E-1781117IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-1485120IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.33E-985112No hitNo description
PROSITE profilePS5011411.95285119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSQLPNSPL NYNNVSINPD NNLQHAAAAS ALASMKGYTL INVPASRNQQ LGTTASSSAA  60
ASAPRGAAGI PRPHGYPYKR CTNYNCNTND TPMWRRGPLG PKTLCNACGI KYRKEEEKRK  120
AKETETSNID QNSNNQTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492723.14e-71GATA zinc finger domain-containing protein 12-like
SwissprotQ9LT454e-20GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A067ERC11e-96A0A067ERC1_CITSI; Uncharacterized protein
TrEMBLA0A2H5PC595e-96A0A2H5PC59_CITUN; Uncharacterized protein
STRINGXP_006492723.11e-70(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-14GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]