PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047780m
Common NameCISIN_1g047780mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 127aa    MW: 14659.2 Da    PI: 10.271
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047780mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.32.5e-1832117190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY+ Y+k +GF++ k++s+k  ++g  +   f Cs++gk++ ++++   + + r++t+ +Ckak+ v   +dgk +v++++ eHnHel+
  orange1.1g047780m  32 QFYKLYGKLMGFEIIKRTSRKY-EEGVLKFVSFSCSQNGKSRCKSRH---AFKLRPTTKKNCKAKVSVIVIRDGKCKVSSIVYEHNHELN 117
                        6****************99998.8889****************9888...9999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1532117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGDELEEHLL ENLILRNSQI IMIFDTTVEL SQFYKLYGKL MGFEIIKRTS RKYEEGVLKF  60
VSFSCSQNGK SRCKSRHAFK LRPTTKKNCK AKVSVIVIRD GKCKVSSIVY EHNHELNTPN  120
KARFLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.92611e-95fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024161868.14e-36protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A067FAM32e-87A0A067FAM3_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-10FAR1-related sequence 4