PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047839m
Common NameCISIN_1g047839mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 260aa    MW: 30494.3 Da    PI: 9.3938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047839mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-191663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  orange1.1g047839m 16 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 63
                       79********************************************97 PP
2Myb_DNA-binding51.81.8e-1669113147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  orange1.1g047839m  69 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
                        7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0741167IPR017930Myb domain
SuperFamilySSF466891.94E-3013110IPR009057Homeodomain-like
SMARTSM007176.5E-171565IPR001005SANT/Myb domain
PfamPF002497.2E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241770IPR009057Homeodomain-like
CDDcd001673.21E-121863No hitNo description
PROSITE profilePS5129419.3568118IPR017930Myb domain
SMARTSM007171.4E-1468116IPR001005SANT/Myb domain
PfamPF002491.1E-1369113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2471117IPR009057Homeodomain-like
CDDcd001675.14E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGAQMGWGII DEGWRKGPWT AEEDRLLIEY VRLHGEGRWN SVARLAGLRR NGKSCRLRWV  60
NYLRPDLKRG QITPHEESII LELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKKAKI  120
SSDNTDKAKN RLLKRQQFHQ QQQHQHQHQH QQQDMQLNQL DLKRIMFLLD ESEHRVPYIP  180
QAPRPEFMGY HPNTITDQDQ QANNFFYNWM PNGNNNSAIM TEPSNEEILW DGLWNLDDFG  240
AAACATSKAS FHNLVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP9661001e-94KP966100.1 Lablab purpureus R2R3-MYB factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420401.20.0transcription factor MYB2
TrEMBLA0A067EXV50.0A0A067EXV5_CITSI; Uncharacterized protein
TrEMBLV4S9P50.0V4S9P5_9ROSI; Uncharacterized protein
STRINGXP_006420401.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-92myb domain protein 305