PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047850m
Common NameCISIN_1g047850mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 237aa    MW: 26534.7 Da    PI: 6.9226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047850mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08124164954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  orange1.1g047850m 124 ARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 164
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-14120173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-13121174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-9121169No hitNo description
PfamPF000104.9E-6125164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAMEDHQIFH HDPSAFSSSS SPSLWPSFNN FPLQTNTQIL PSSSRHIIQP SSSTLLFGDH  60
NNNNNNNNII DQEEDEEPEE ELGAMKEMMY RIAAMQPVDI DPTTIRKPKR RNIRISDDPQ  120
SVAARHRREK ISEKIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LQSNQCNIVG  180
DDHYNKLSLG ATTNTTIATT TASASAAGAL DPILGHSLPF HGNRNSSFYF NHHEVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464873.11e-175transcription factor HEC3
TrEMBLA0A067ET401e-176A0A067ET40_CITSI; Uncharacterized protein
STRINGXP_006464873.11e-174(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-47bHLH family protein