PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047986m
Common NameCISIN_1g047986mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 135aa    MW: 15215.3 Da    PI: 5.6679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047986mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322.1e-101243356
                       HHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 33 LAkklgLterqVkvWFqNrRakek 56
                       LA++lgL+ rq+ vW+qNrRa+ek
  orange1.1g047986m  1 LARRLGLPPRQIAVWYQNRRAREK 24
                       89********************99 PP
2HD-ZIP_I/II691e-221623293
        HD-ZIP_I/II 32 lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                       lar+Lgl prq+avW+qnrRAR k + +E dy+++++++d++ +en++Le+ev  L++elk+
  orange1.1g047986m  1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62
                       89********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-8135IPR009057Homeodomain-like
PROSITE patternPS000270124IPR017970Homeobox, conserved site
PROSITE profilePS5007111.774126IPR001356Homeobox domain
CDDcd000864.65E-8126No hitNo description
Gene3DG3DSA:1.10.10.601.9E-9124IPR009057Homeodomain-like
PfamPF000468.5E-8124IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
LARRLGLPPR QIAVWYQNRR AREKIHTIEL DYKTIQQELD NVLAENRKLE QEVGMLKHEL  60
KKSQQMLLAS NPSATLLPSV STSGDNDLTS SSSPLNMTCN WEDTGLLPMD ELYSCLIRPQ  120
GQPENHSMND LSIV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446710.17e-94homeobox-leucine zipper protein ATHB-52
RefseqXP_006469078.17e-94homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2H5PT844e-94A0A2H5PT84_CITUN; Uncharacterized protein
STRINGXP_006469078.13e-93(Citrus sinensis)
STRINGXP_006446710.13e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2299333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.16e-19homeobox protein 52