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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g048129m |
| Common Name | CISIN_1g048129mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 412aa MW: 46812.9 Da PI: 7.1393 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g048129m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 276.8 | 6.7e-85 | 44 | 412 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsev 87
lv+lL+ cAe + s+++ +a++lL + ++ +s+ g++++R+++yf++AL++r +r +++ ++k ++ +e + + +e++ +l+ ++
orange1.1g048129m 44 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNReTGKITSKRVKGEEIQLLQPEETILSLRPalvaCYKE 135
689****************************************************4445555555666665555555555554345565666 PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
s +++ + ++ qaI e v++++r+H iD+ i G + + L+qaLa+R+e p l+iT+vgs +sk+++eetg+rLa fAe+ ++pf+f
orange1.1g048129m 136 SSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVeLLKITAVGS---SSKQRMEETGKRLAYFAETWNLPFSF 224
679999*******************************************7665499*******...58************************ PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
+++++++++dl+ ++++++ gEa+aV + + l r+ + d ++k+++++sP v+v++e ea+hns++F +rf+e l +ysa fd+
orange1.1g048129m 225 KIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTR--------HPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDC 308
******************************888886........457899****************************************** PP
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
l+++++r + er++ E+++lg++i+n++a+eg+er+ rh + Wr+ ++++G+ +++ls++ qa+l++++++ +++ + ++l+ g
orange1.1g048129m 309 LKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAfASYLTLDRNGQCLIVG 400
***************************************************************************555568888899999** PP
GRAS 362 WkdrpLvsvSaW 373
Wk+ p +s+S+W
orange1.1g048129m 401 WKGSPQLSLSVW 412
************ PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
VIRAATAIYL QSSSHSSSNL SLLYHFCGGS AINISEEESK DVELVHLLIL CAEKIGSQQF 60
DRASTLLDHC ENFSSKIGNS VERVVHYFVK ALQERFNRET GKITSKRVKG EEIQLLQPEE 120
TILSLRPALV ACYKESSFYQ ATLFAGTQAI IERVASAKRI HLIDLAIRSG SHCIVLMQAL 180
ATRQECPVEL LKITAVGSSS KQRMEETGKR LAYFAETWNL PFSFKIVLVT ETKDLNEDKF 240
DLNAGEAVAV YSPILLSRTR HPDFLIKMLR KISPCVMVII EVEANHNSQN FEDRFFEVLF 300
HYSASFDCLK VSMARCDPER VTFEEMYLGQ HIRNIIATEG EERIFRHMKI DAWRKFFHRF 360
GMVEAELSTS SLFQAELVIK NFAFASYLTL DRNGQCLIVG WKGSPQLSLS VW
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