PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g048191m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NZZ/SPL

Protein Properties

Length: 256aa MW: 27295 Da PI: 9.5121

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g048191m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	44.1	5.3e-14	25	174	40	178
NOZZLE 40 kksrgrkpgskt.aqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssvaaisntatrlpvpvdrgvvlqgfps.........slgs 121 k rgrkp k+ aq+kqkk rgmgva+ler + +e +g s ++ +p v +g g+ps l orange1.1g048191m 25 KSGRGRKPSNKAnAQKKQKKTPQRGMGVAQLERLRQQEMPPPTPSIQNGHLQSHMPFPEPIPSVP--VLHGAGHYGMPSvvvgngllsPLEE 114 567****9973788999999***************99999*99999999888877..6667777777776666655546777 PP NOZZLE 122 srilc..ggvgsgqvmidpvispwgf.vetsatthelssisnpqmynassnnrcdtcfkk 178 sr+l gg sgqv++ + g e s+ +++ q + +++cd c+k orange1.1g048191m 115 SRVLHsgGGGRSGQVLMSKNLVGLGTsKELSSMPKNMHVHHHQQPWGVLPQQHCDICLKG 174 99985214445999988888776257889899999999999999999999***984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	3.2E-12	25	174	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSCTVCDHHH EAAAAAAASG VNIVKSGRGR KPSNKANAQK KQKKTPQRGM GVAQLERLRQ 60 QEMPPPTPSI QNGHLQSHMP FPEPIPSVPV LHGAGHYGMP SVVVGNGLLS PLEESRVLHS 120 GGGGRSGQVL MSKNLVGLGT SKELSSMPKN MHVHHHQQPW GVLPQQHCDI CLKGTQAVLI 180 HRNGNSMGRN VPREYEFFPG KGGKSTSSKD LEFPLEEASV AVHGEASWFT PTAYYSDSNA 240 CGPSNSIDLS LKLSV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024034079.1	0.0	protein SPOROCYTELESS isoform X2
TrEMBL	A0A482CNN4	0.0	A0A482CNN4_CITSI; SPOROCYTELESS-like EAR-containing protein 4
STRING	XP_006464657.1	1e-164	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18639	6	7

Link Out ? help Back to Top
Phytozome	orange1.1g048191m