PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048224m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 221aa    MW: 24874.3 Da    PI: 7.9997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048224mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082311948
                       TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +G g W+ ++ + g++R++k+c++rw++yl
  orange1.1g048224m  2 YGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 31
                       89999***********************97 PP
2Myb_DNA-binding231.9e-073777139
                       TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39
                       rg + ++E +l ++++k+lG++    W++Ia++++ gRt ++
  orange1.1g048224m 37 RGEFVADEIDLMIRLHKLLGNRqehMWSLIAARLP-GRTSND 77
                       788999*****************************.***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.736135IPR017930Myb domain
PfamPF002491.1E-6131IPR001005SANT/Myb domain
CDDcd001670.00244231No hitNo description
SuperFamilySSF466895.13E-14277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-12238IPR009057Homeodomain-like
PROSITE profilePS500906.7833277IPR017877Myb-like domain
PfamPF002497.1E-63777IPR001005SANT/Myb domain
CDDcd001673.28E-43977No hitNo description
Gene3DG3DSA:1.10.10.609.1E-123977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MYGEGKWHQV PLRAGLNRCR KSCRLRWLNY LKPNIKRGEF VADEIDLMIR LHKLLGNRQE  60
HMWSLIAARL PGRTSNDKLK PEAPKIAKHN VIKPRPRTFC KDLTWLRPKV TVLENVQVQL  120
KDNISNKLPS PITVDQAALE NDDIKRWETL LEEKVDDGGS TYCSTSGEHN ISLGDGGSAY  180
CSEHNTSLCA ASEAGCYNAG EVGQCQWSDI SFDADLWNIL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444723.14e-56transcription factor MYB113 isoform X1
SwissprotQ9FNV93e-39MY113_ARATH; Transcription factor MYB113
TrEMBLV4T2W21e-157V4T2W2_9ROSI; Uncharacterized protein
STRINGXP_006430621.11e-158(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3298622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-41myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]