PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048225m
Common NameCISIN_1g048225mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 128aa    MW: 14756.7 Da    PI: 5.9967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048225mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-1420101996
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        ++l+ + l++ +k +++++++   s ++ +  ++g +W+vkl  +k ++ + + +GW++Fv+a  + +g  v+F+++++s+f+ +  +
  orange1.1g048225m  20 STLRDQKLRILNKIVRKISHE--LSDMVHIIVPNGYVWQVKL--NKEGRNVRFDDGWQDFVEAYSISVGSLVLFEYESNSTFQAH--I 101
                        566777899999***999755..8889***************..********************************999999544..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1810104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-1111103No hitNo description
SuperFamilySSF1019361.28E-1711103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4212105IPR003340B3 DNA binding domain
SMARTSM010191.2E-913105IPR003340B3 DNA binding domain
PfamPF023622.8E-1120102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
PILPSLPEIP PRFVKARLLS TLRDQKLRIL NKIVRKISHE LSDMVHIIVP NGYVWQVKLN  60
KEGRNVRFDD GWQDFVEAYS ISVGSLVLFE YESNSTFQAH IYDETAWEIN YPSSDKESHT  120
SGEEFHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041320.17e-89B3 domain-containing transcription factor VRN1-like
TrEMBLA0A067EKN79e-89A0A067EKN7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006494014.11e-68(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-26B3 family protein