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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g048299m |
| Common Name | CISIN_1g048299mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 460aa MW: 52044.3 Da PI: 7.0641 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g048299m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 400.9 | 1.3e-122 | 67 | 458 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaal 81
+++lL++cAe +s+ d+++a++l++ ls ++sp+gd+++Rl++ f +AL+ rl+ + + + ++ ++t++ + +al
orange1.1g048299m 67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLhHANATLLMMNITTTTTATtlpyntttynD---RNAL 155
589**************************************************98444455555555555554456665554321...2222 PP
GRAS 82 kl....fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetg 162
+ +++++P+++fshltaNqaIle+++ g++ +Hi+Dfdi++G+QWp+L+qaL +R ++pp+lRiTg g+ + e l++tg
orange1.1g048299m 156 QScylsLNQITPFIRFSHLTANQAILESLQvGQQSIHILDFDIMHGVQWPPLMQALVERFknsnmlQPPPMLRITGTGN----DIEILQRTG 243
223567**********************98466**************************976777777***********....9******** PP
GRAS 163 erLakfAeelgvpfefnvl..vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
erL kfA++lg++f+f++l + + +++ +++L + p+E+laVn++l lh+ll +++++++ + +L+ +k l+P+vv+++e+ea+hn
orange1.1g048299m 244 ERLLKFAQSLGLRFQFHPLllMNDdptSVAFYLPSALTILPDETLAVNCMLFLHKLL-KDHDTRD-LRLFLHKIKALNPRVVTIAEREASHN 333
******************97633312134444789**********************.5555555.69************************ PP
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
++ Fl+rf+ea+++y a+fdslea+lp++s+er vE++++greiv++va+eg++r+erhe++ +W++ l+++G+++vpls +a +qaklll
orange1.1g048299m 334 HPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLL 425
******************************************************************************************** PP
GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
r ++ s+gy+++ ++sl+lgW++r+L+svS+W
orange1.1g048299m 426 RLHYpSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
********************************* PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010223 | Biological Process | secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MLGSLNNTTS SRHDQQQEED PLAAAASSSD LMLQHHQPLH QSHHQYSSSS SSSRVGGLMN 60
SPPAIHMRQL LISCAELFSQ ADFSAAHRLI SILSANSSPY GDSIERLVHQ FIRALSLRLN 120
LHHANATLLM MNITTTTTAT TLPYNTTTYN DRNALQSCYL SLNQITPFIR FSHLTANQAI 180
LESLQVGQQS IHILDFDIMH GVQWPPLMQA LVERFKNSNM LQPPPMLRIT GTGNDIEILQ 240
RTGERLLKFA QSLGLRFQFH PLLLMNDDPT SVAFYLPSAL TILPDETLAV NCMLFLHKLL 300
KDHDTRDLRL FLHKIKALNP RVVTIAEREA SHNHPLFLQR FVEAVDHYGA IFDSLEATLP 360
PNSRERLAVE QVWFGREIVE IVATEGENRK ERHERFDSWE MILRSCGYSN VPLSGYALSQ 420
AKLLLRLHYP SEGYQLQVLN NSLFLGWQNR ALFSVSSWH*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
