PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048558m
Common NameCISIN_1g048558mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 269aa    MW: 30009.5 Da    PI: 6.9333
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048558mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.6e-3612108196
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aCaaCk++rrkC++dCv+ pyfp +q+++f+ vhk+FG+sn++k++k+l++ + r++a++s+ +eA ++ +dPv+G +g ++kl+++ e l 
  orange1.1g048558m  12 ACAACKHQRRKCTQDCVFPPYFPGNQSEEFQLVHKIFGVSNLSKIIKNLETPQdRQEAVESIKWEAAMWEQDPVHGPLGAYRKLEREFEALM 103
                        7************************************************66555*********************************99987 PP

             DUF260  92 aelal 96 
                        +  ++
  orange1.1g048558m 104 KMKNQ 108
                        65444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77211114IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3412105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MANNGELGNR YACAACKHQR RKCTQDCVFP PYFPGNQSEE FQLVHKIFGV SNLSKIIKNL  60
ETPQDRQEAV ESIKWEAAMW EQDPVHGPLG AYRKLEREFE ALMKMKNQQT SQQIIDYGRG  120
PVMTTSGLIS YPTCQQEQAH VINSNEAPHA FIDQKFNTFG QPSDADYNRS GPTMVGHSYN  180
SPINDNNIVQ IMEQQGPRAR QRRGIATSGD VAINDGQLPR VGGECYDGVT SYYAPTLPSS  240
SHSQLSGPYA QLPYLHININ GFAPRREI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-221312012117LOB family transfactor Ramosa2.1
5ly0_B4e-221312012117LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067GDJ20.0A0A067GDJ2_CITSI; Uncharacterized protein
STRINGXP_006468210.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1960367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-27LOB domain-containing protein 2