PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g048576m

Common Name

CISIN_1g048576mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 143aa MW: 16239.5 Da PI: 6.1001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g048576m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.6	6.4e-33	17	125	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk..dkevlskkgelvglkktLvfyk 110 +kv+g++l++ ++i+e+d++k+ePw+Lp+k+ ++ ewyfF++ d+k+++ +++nr+++ gyW+ g+ dk ++++++++vg+k+ Lvf+ orange1.1g048576m 17 RKVAGHRLSI-NIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSgtDKIITTAGRKVVGIKNALVFHV 107 7899999999.89*************87778999************************7765438888888999******** PP NAM 111 grapkgektdWvmheyrl 128 g+ap+g+kt+W+mheyrl orange1.1g048576m 108 GNAPNGTKTNWIMHEYRL 125 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.918	1	142	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-39	16	142	IPR003441	NAC domain
Pfam	PF02365	2.8E-14	31	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
NSDVFDHDLI CLPPCFRKVA GHRLSINIIA EIDLFKFEPW ELPSKALFGD YEWYFFCPMD 60 RKNPEASEPN RVIRVGYWED AGSGTDKIIT TAGRKVVGIK NALVFHVGNA PNGTKTNWIM 120 HEYRLFEPPP NNGSSKLDDW IL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	6	142	27	159	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	6	142	27	159	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	6	142	27	159	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	6	142	27	159	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	6	142	30	162	NAC domain-containing protein 19
3swm_B	1e-56	6	142	30	162	NAC domain-containing protein 19
3swm_C	1e-56	6	142	30	162	NAC domain-containing protein 19
3swm_D	1e-56	6	142	30	162	NAC domain-containing protein 19
3swp_A	1e-56	6	142	30	162	NAC domain-containing protein 19
3swp_B	1e-56	6	142	30	162	NAC domain-containing protein 19
3swp_C	1e-56	6	142	30	162	NAC domain-containing protein 19
3swp_D	1e-56	6	142	30	162	NAC domain-containing protein 19
4dul_A	1e-56	6	142	27	159	NAC domain-containing protein 19
4dul_B	1e-56	6	142	27	159	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953916.1	1e-100	LOW QUALITY PROTEIN: NAC domain-containing protein 13-like
Swissprot	A0A3Q7HH64	9e-57	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A067DBD4	1e-101	A0A067DBD4_CITSI; Uncharacterized protein (Fragment)
STRING	XP_010675611.1	2e-56	(Beta vulgaris)
STRING	XP_006464708.1	2e-56	(Citrus sinensis)
STRING	XP_010545806.1	1e-56	(Tarenaya hassleriana)
STRING	XP_006451940.1	2e-56	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21958	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	5e-59	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	orange1.1g048576m

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]