PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048670m
Common NameCISIN_1g048670mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 129aa    MW: 14356.6 Da    PI: 10.1187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048670mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62.1e-181297291
               FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                       fY++Y+k+  F v+++++kk+ +ng ++ +tf C ++gk+e+++ +   + +++++ + gC+ak+   +++dgkw++ +l+ +HnH l+p
  orange1.1g048670m 12 FYKAYGKQERFPVKVKSTKKK-TNGIVKYATFECGRSGKSESKSAN---ALKPKPNVKNGCDAKIGGCLNEDGKWVLRTLNFQHNHGLSP 97
                       9**************987775.9999***************99888...9999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-141297IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MLFDSHEEMC AFYKAYGKQE RFPVKVKSTK KKTNGIVKYA TFECGRSGKS ESKSANALKP  60
KPNVKNGCDA KIGGCLNEDG KWVLRTLNFQ HNHGLSPDKA RYFPCNHIIS ASAKKRIEMN  120
DCARIIIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036325.15e-75protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024041400.13e-75protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A067D5W15e-91A0A067D5W1_CITSI; Uncharacterized protein
STRINGXP_006480513.12e-57(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-14FAR1-related sequence 4