PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048727m
Common NameCISIN_1g048727mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 369aa    MW: 39291.1 Da    PI: 7.238
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048727mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43.1e-35881914105
                TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 
                        k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + +  s+++++++ 
  orange1.1g048727m  88 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvngtlkIPTTTTSNVHHPNNV 179
                        899***********************************************************888884443222233222222222222222 PP

                TCP  89 kaaksaakskksqksaa 105
                        +      +++k++k+++
  orange1.1g048727m 180 EI-----SPEKKRKRSS 191
                        11.....2222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3091191IPR005333Transcription factor, TCP
PROSITE profilePS5136926.00392146IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTSCRETDPD DDGVASDVST GDAEESNKTV HETTPLQAIP LKEEPVDSYQ EQKPGLPTPI  60
GVVPVAMQMQ VPMQVPMTTV TANNNNNKRS STKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE QAIIEATGTG TVPAIAVSVN GTLKIPTTTT SNVHHPNNVE  180
ISPEKKRKRS SSDNDDINCS RAVTVTQPCG LAPVAPQGLV PVWTLGNAGG MNMNMMVPAN  240
TFWMVPQVQP GPSQPQIWAF SPVLNVAARP VSSFVGASAT AGSFEHVSTS SVQVQPVVVN  300
NNKNNSVNGL SSSVGATVTT NSSSSMAPSM SSGGKPQMLR DFSLEIYDKQ ELQLLGRSGN  360
LHSQPNKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.82990.0flower| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4921004e-89KR492100.1 UNVERIFIED: Citrus sinensis clone 33-2c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440511.10.0transcription factor TCP9
TrEMBLA0A067F8980.0A0A067F898_CITSI; Uncharacterized protein
STRINGXP_006440511.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-58TCP family protein