PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00077-abinit-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 235aa    MW: 26602.6 Da    PI: 6.0518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00077-abinit-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171055148
                                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                       rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  snap_masked-scaffold00077-abinit-gene-0.18-mRNA-1 10 RGNITPDEDDLIIRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                                                       7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-26160IPR009057Homeodomain-like
SuperFamilySSF466891.0E-15162IPR009057Homeodomain-like
PROSITE profilePS5129426.991559IPR017930Myb domain
SMARTSM007171.3E-16957IPR001005SANT/Myb domain
PfamPF002497.3E-161055IPR001005SANT/Myb domain
CDDcd001672.38E-131455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNYLRPDIKR GNITPDEDDL IIRLHALLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKRLI  60
SEGTDPNTHK KLSDPLKELR RRKNNKSNNK SNNRNKQKNK SKSMANVETE KPKVHQPKPV  120
RFTSFSVPRN ESCDWNVFSG SSGPEIKGGC VGSEMVNNVN PWCDFKDGEN GVGVGFLVGN  180
EDDHDDLVNG SDFECQSDLP SGDNSLAKLY EEYLDLLKME ENQVDLDNFA ESLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1325951108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682KELRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924099.11e-134transcription factor MYB8-like
TrEMBLA0A2N9IJB51e-95A0A2N9IJB5_FAGSY; Uncharacterized protein
STRINGEOX956618e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-36myb domain protein 5