PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00136-abinit-gene-1.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 261aa    MW: 28611.2 Da    PI: 4.4984
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00136-abinit-gene-1.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-10137182247
                                                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                                        + +k+ rr  +NR AA rsR+RKk+++  Le k+  Le+e ++L  
  snap_masked-scaffold00136-abinit-gene-1.12-mRNA-1 137 PTSKKRRRQLRNRDAAVRSRERKKMYVRDLELKSRYLEGECRRLGH 182
                                                        5789************************************988764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-11134196No hitNo description
SMARTSM003385.0E-6136200IPR004827Basic-leucine zipper domain
PfamPF001701.0E-8138185IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76138180IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-10140196No hitNo description
CDDcd147043.24E-17141192No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDDADFLNDE ILQKIDWDCF FDDFPEDGNG FSLEPMGLPD SVSPGIDEIQ TFLMNDDNDN  60
NNNSGLAEPS IEFCDSFFAD IIVNSPVEAS GEVVDASSRI DKDSSGDSDD GNGSSVKEKV  120
DNDDQTQDDD NDGADDPTSK KRRRQLRNRD AAVRSRERKK MYVRDLELKS RYLEGECRRL  180
GHLLQCCVAE NQALRLSLHS GSAFGASATK QEIPAVGFPA LVPGHHVPIQ SASNAPVNPG  240
NSSTRKRGTG KPRNSSKRGK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140159KRRRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918417.11e-104bZIP transcription factor 60
TrEMBLA0A2N9ITV31e-122A0A2N9ITV3_FAGSY; Uncharacterized protein
STRINGXP_002510740.12e-55(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-16basic region/leucine zipper motif 60