PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 260aa    MW: 29280 Da    PI: 10.0319
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-1528117186
                                           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkek 53 
                                                        +W+++ +++Liea  ++  +l+rg+l++ +W+ev++++       ++ +  rs +qCk++
  snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1  28 CWSEDATHTLIEAWGDRYLDLNRGNLRQRHWQEVAAAVnarhatsASSKSFRSDIQCKNR 87 
                                                        7***************************************99999888999********* PP

                                           trihelix  54 wenlnkrykkikegekkrtsessstcpyfdqle 86 
                                                        ++ l+k+yk +k+ +       +s +p+f +l+
  snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1  88 IDTLKKKYKIEKAKATA---AYVSAWPFFASLD 117
                                                        ************99997...46779****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2526119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESPSPSPSP SPSRPSTQTP AAALREDCWS EDATHTLIEA WGDRYLDLNR GNLRQRHWQE  60
VAAAVNARHA TSASSKSFRS DIQCKNRIDT LKKKYKIEKA KATAAYVSAW PFFASLDSLL  120
GSSFPKPSTA APRRNTPPWN LSTPIPVGPR THKRPAPSPA VDSSFRRNST AAAAEDGDGP  180
DSSSKEEKEV EKIGYRELAQ AIERFGEIYE RVEGAKQKQM MELEKQRMQF TKDLECHRMQ  240
LLLETQVQLQ KIKRARRQCQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921041.11e-152trihelix transcription factor ASIL2
TrEMBLA0A2I4DUL11e-105A0A2I4DUL1_JUGRE; trihelix transcription factor ASIL2-like isoform X1
STRINGXP_004505493.17e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-72sequence-specific DNA binding transcription factors