PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00369-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 337aa    MW: 37470 Da    PI: 8.578
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00369-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like58.21.7e-182053134
                                            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktile 34
                                                       kprl+WtpeLH+rFveav+qLGG++kAtPk++++
  snap_masked-scaffold00369-abinit-gene-0.14-mRNA-1 20 KPRLKWTPELHQRFVEAVNQLGGPDKATPKSLMR 53
                                                       79*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-151853IPR009057Homeodomain-like
SuperFamilySSF466891.02E-61955IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-122055IPR006447Myb domain, plants
PfamPF143791.5E-22102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGLQNMQNQN MNLVLSTDAK PRLKWTPELH QRFVEAVNQL GGPDKATPKS LMRKYRLGKS  60
QQSESCTDSK QEDYREIQTT DGHFSREITS DANHNQNNES LQIAQALKLQ MEVQRKLHEQ  120
IEVQRHLQLR IEAQGKYLQS VLKKAQETLA GYNSSSLGVE LAKAELSQLV SMVNTGCPSS  180
SISELTELGG LSLKTVERNQ MRGTICSMES SLTSSESSGR KEEKRPMKES GDLQKSNTTT  240
LELSLMNIHP EDKPRSIETS NQASGKKRTG SAISNTTCVE QPVAKRSPTH RDKSSNQLRK  300
SGLLGTLDLN SQYQNDIDSG PKAIDLNCKG MEQCNGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894853.10.0myb family transcription factor PHL8-like
RefseqXP_023894944.10.0myb family transcription factor PHL8-like
SwissprotF4I2749e-72PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2N9J5Z00.0A0A2N9J5Z0_FAGSY; Uncharacterized protein
STRINGXP_008339891.11e-162(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.17e-71G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]