PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 149aa    MW: 17066 Da    PI: 8.3231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-071839627
                                                       -SGGGGTS--TTTTT-SS-SSS CS
                                            zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                                                       C+ f +tGtC+ G++Ck +H++
  snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1 18 CPVFEATGTCPQGSKCKLHHPK 39
                                                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.3941240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-51337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEYISLLSQC RKKHSYVCPV FEATGTCPQG SKCKLHHPKN RSKGSKGKKR KRGGQQRKAQ  60
GRYFGSTHVN VSEPRTAVNE KHSTQHNDDI FIEGKYADYI SLEFSDEEVG ETNDLTSERM  120
FYDSDSSDLQ LDDLDELIKP FRIMNRNTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652GKKRKRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887129.19e-69uncharacterized protein LOC111999239 isoform X1
RefseqXP_023887130.19e-69uncharacterized protein LOC111999239 isoform X2
TrEMBLA0A2N9GAX11e-67A0A2N9GAX1_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_1156.48e-50(Carica papaya)
STRINGPGSC0003DMT4000651472e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010