PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold00719-abinit-gene-0.45-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 88aa MW: 9502.89 Da PI: 4.4085

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold00719-abinit-gene-0.45-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44.8	2.8e-14	34	60	1	27
G2-like 1 kprlrWtpeLHerFveaveqLGGsekA 27 kprlrWt eLHerFv+av+qLGG++ A snap_masked-scaffold00719-abinit-gene-0.45-mRNA-1 34 KPRLRWTAELHERFVDAVTQLGGPDSA 60 79**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-13	31	62	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-5	34	59	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-9	34	60	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MYSAIHSLPL DAQGSLDGTN LPGDACLVLT SDPKPRLRWT AELHERFVDA VTQLGGPDSA 60 YTLGDILCQI KMMSAMVSRE NDVAVITI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023911221.1	1e-35	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q94A57	1e-30	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2N9G4L5	1e-33	A0A2N9G4L5_FAGSY; Uncharacterized protein
STRING	XP_002518104.1	2e-32	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15413	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-33	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]