PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35238.5 Da    PI: 4.5476
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20104157356
                                                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                        k++++++eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 104 KKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 157
                                                        56789************************************************9 PP
2HD-ZIP_I/II134.63.4e-43103193191
                                        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60 
                                                        ekkrrls eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE
  snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 103 EKKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 162
                                                        69********************************************************** PP

                                        HD-ZIP_I/II  61 kdyeaLkraydalkeenerLekeveeLreel 91 
                                                        +dy++Lk++yd+l ++ ++L ke+e+L++e+
  snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 163 RDYDVLKSSYDSLYSNYDTLVKEHEKLKSEM 193
                                                        ****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.96199159IPR001356Homeobox domain
SMARTSM003893.2E-20102163IPR001356Homeobox domain
SuperFamilySSF466896.42E-20104170IPR009057Homeodomain-like
CDDcd000861.22E-19104160No hitNo description
PfamPF000461.3E-17104157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-22105166IPR009057Homeodomain-like
PRINTSPR000314.9E-6130139IPR000047Helix-turn-helix motif
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PRINTSPR000314.9E-6139155IPR000047Helix-turn-helix motif
PfamPF021832.0E-13159193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
KLCLPTYVLS SFLLSLSLFC VCAPCLVGKT HVSTQDWMME SGRLFFDPTA CRGSNMLFLG  60
NGDNIFRGGR AIMSMEESSK RRSFFSSPDD LFDEEYYDEQ LPEKKRRLSP EQVHLLEKSF  120
ETENKLEPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYDVLKS SYDSLYSNYD  180
TLVKEHEKLK SEMTIGLQVV SLNEKLQAKG VAGADILAQK AEPLPGDITN VSALQFSVKV  240
EDRLSCGSDV VDEDGPQILD TGDSYFPSDN YPAEDDGSDD GHSYFRNVFV AAEPQHQEDE  300
EPLEWLEWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5299632e-78KF529963.1 Malus domestica homeobox-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929344.11e-179homeobox-leucine zipper protein HAT5 isoform X1
SwissprotQ022833e-93HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2I4EUP81e-141A0A2I4EUP8_JUGRE; homeobox-leucine zipper protein HAT5
STRINGEOY023591e-133(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-84homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]