PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold00862-abinit-gene-0.30-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 134aa MW: 15540.3 Da PI: 10.7289

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold00862-abinit-gene-0.30-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m+v+gLtl+hvkSHLQ+YR+ snap_masked-scaffold00862-abinit-gene-0.30-mRNA-1 63 PRLRWTPDLHLCFVHAVERLGGEDRATPKMVLQIMNVNGLTLSHVKSHLQMYRS 116 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.634	59	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-32	59	118	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-16	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-25	63	117	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	64	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MMKRFEGESS HKGSSFSSLV NKEYLSKSSH IMRPSKRHAI ERLPELSLKS PPVVRPYVRS 60 KMPRLRWTPD LHLCFVHAVE RLGGEDRATP KMVLQIMNVN GLTLSHVKSH LQMYRSMKHE 120 QMLEGIYISL PIFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	63	119	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	63	119	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	63	119	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	63	119	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	63	119	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919321.1	1e-79	probable transcription factor KAN3
TrEMBL	A0A061GH60	4e-47	A0A061GH60_THECC; Homeodomain-like superfamily protein
TrEMBL	B9RXJ2	6e-47	B9RXJ2_RICCO; DNA binding protein, putative
STRING	EOY28733	7e-48	(Theobroma cacao)
STRING	XP_002518461.1	1e-47	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	9e-35	G2-like family protein