PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01478-abinit-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 271aa    MW: 29380.4 Da    PI: 4.443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01478-abinit-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-1863113155
                                                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                        ++y+GVr++  +g+WvAeIr+p  ng  k+ +lg+f ta +Aa a+++a+  ++g
  snap_masked-scaffold01478-abinit-gene-0.23-mRNA-1  63 CRYRGVRQRT-WGKWVAEIREP--NG-GKKLWLGTFVTAIDAASAYDKAASTMYG 113
                                                        78*****999.**********9..33.5**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1263113IPR001471AP2/ERF domain
CDDcd000189.62E-3063122No hitNo description
SuperFamilySSF541713.07E-2064122IPR016177DNA-binding domain
SMARTSM003802.1E-3364127IPR001471AP2/ERF domain
PROSITE profilePS5103221.02264121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3064122IPR001471AP2/ERF domain
PRINTSPR003671.4E-116576IPR001471AP2/ERF domain
PRINTSPR003671.4E-11103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDNPDQKKRK RKNSRDSVAE ALAKWKEKNT AQFASCGAPK VQAKGSKKGC CVKGKGGPEN  60
SLCRYRGVRQ RTWGKWVAEI REPNGGKKLW LGTFVTAIDA ASAYDKAAST MYGSSARLNF  120
PDITSRTSPM ESVKDCCWTS SESVSYSMGS PVGSESTTAA NPSEFCADED ALYYPVTEAN  180
MPSLVGTEAE GESTGVSEFC ADEGTLYYPV TEAEDDSTNY FGDNGQENLL DCSENENFMY  240
EIMALLNDPV GNTDSVLGFG YDADQLGLGK F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1865121360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916298.10.0dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1L6CAW93e-52A0A1L6CAW9_9ROSI; AP2/ERF domain-containing transcription factor (Fragment)
TrEMBLA0A1L6CB533e-52A0A1L6CB53_VERFO; AP2/ERF domain-containing transcription factor (Fragment)
STRINGXP_002520794.12e-49(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-29ERF family protein