PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold02177-abinit-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 220aa MW: 24271.8 Da PI: 4.905

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold02177-abinit-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H snap_masked-scaffold02177-abinit-gene-0.9-mRNA-1 69 YTCTFCRREFRSAQALGGHMNVH 91 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-6	66	96	No hit	No description
PROSITE profile	PS50157	11.157	69	96	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-5	69	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGAELGLLSL TQLQKLSQSQ QNQNQLNPSA WMWNQKQAQQ QEDDESWEVK AFAEDTGNIL 60 GTTWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLHQ AQPNSGNIPT SSPNSNTPFI 120 IPTQEFLANG GGLCLLYQLP NYNAAAFTTS TPIDSTACID QSPSTLLSIS PYASPPANFP 180 LGTQPGTNSS SSYYSPTTDN YNNIEDLDLE LRLGQRPMPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	64	91	2	29	superman protein
2l1o_A	2e-13	64	91	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023882398.1	1e-140	zinc finger protein 10
TrEMBL	A0A2N9EKI1	7e-91	A0A2N9EKI1_FAGSY; Uncharacterized protein
STRING	EMJ11449	7e-81	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3525	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-41	C2H2 family protein