PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02209-abinit-gene-0.36-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 107aa    MW: 12646.5 Da    PI: 6.5246
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02209-abinit-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS87.12.8e-272105271374
                                               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                                        ++a++p+e+++r   E+e +gr+++nv+aceg er+er et+ kW+ r  +aGF+++p++
  snap_masked-scaffold02209-abinit-gene-0.36-mRNA-1   2 FDATMPNEDHQRLQFEKERIGRDAMNVIACEGLERVERPETFDKWEVRTLRAGFRQLPID 61 
                                                        58999******************************************************* PP

                                               GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                        e+a+  ak  ++  + + + + ++ +++++gWk+r ++++S+W+
  snap_masked-scaffold02209-abinit-gene-0.36-mRNA-1  62 EEAVLVAKKAVNSEYHKDFVIYKDGQWMLQGWKGRIIYAISCWK 105
                                                        ************999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.075185IPR005202Transcription factor GRAS
PfamPF035149.7E-252105IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MFDATMPNED HQRLQFEKER IGRDAMNVIA CEGLERVERP ETFDKWEVRT LRAGFRQLPI  60
DEEAVLVAKK AVNSEYHKDF VIYKDGQWML QGWKGRIIYA ISCWKPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897036.19e-67scarecrow-like protein 14
SwissprotQ9SNB81e-37SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A2N9G6872e-49A0A2N9G687_FAGSY; Uncharacterized protein
TrEMBLA0A2N9HNJ83e-49A0A2N9HNJ8_FAGSY; Uncharacterized protein
STRINGPGSC0003DMT4000637697e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14801813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.32e-40GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]