PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02688-abinit-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 366aa    MW: 41384.7 Da    PI: 4.4455
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02688-abinit-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-08205252347
                                                       SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                                       +WT+eE+e++ ++v   +       Wk+ +  ++  R+ k+++s+++++
  snap_masked-scaffold02688-abinit-gene-0.9-mRNA-1 205 KWTEEEEEIFHEVVYSNPLSlgrnFWKKLSLVFP-SRSKKDLVSYYFNV 252
                                                       7*************9877667777**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0013202255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-4204252IPR009057Homeodomain-like
SuperFamilySSF466893.3E-5204253IPR009057Homeodomain-like
PfamPF002496.4E-6205252IPR001005SANT/Myb domain
PROSITE profilePS500906.202205253IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPHKNLFLQW DEALGKDTVT EVSNLGDKDL ETNEPLSSFS ISSNEEDDGS GASAYSYLSP  60
EYFEVDFPRR TLVPFEDVLP SYLDRYPRKQ VPLGADHQAS IPLWGNHINK NKLDLAENCD  120
SSTSDGGSSE EKLMGTCVIP MPDMSTDKGY YAGCGRTACD CLDSGSVRCV RQHVNEAREE  180
LRKTLGHDKF VNLGFSDMGE EVAHKWTEEE EEIFHEVVYS NPLSLGRNFW KKLSLVFPSR  240
SKKDLVSYYF NVFMLWRRAG QNRSTFLDID SDDDEWHGTN MSSSCGSVNN GTALQVRGIN  300
SEHGKRSEAD WCSDVGQFYL LEPCDAKVWD ARCTSTSLKN FDILSPWNMI EEVFEEGTSD  360
NKKRDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878452.10.0uncharacterized protein LOC111990920
TrEMBLA0A2N9J5Q21e-151A0A2N9J5Q2_FAGSY; Uncharacterized protein
STRINGEOY017451e-112(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810