PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold03271-abinit-gene-0.12-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

YABBY

Protein Properties

Length: 135aa MW: 14844 Da PI: 6.6095

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold03271-abinit-gene-0.12-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	101.5	1.7e-31	11	125	2	116
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 d+ s seq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ a + snap_masked-scaffold03271-abinit-gene-0.12-mRNA-1 11 DHLSPSEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLFIPSANQL 70 78899*******************************************999999999999 PP YABBY 62 hldeslkee...lleelkveeenlksnvekeesastsvsseklsenedeevprvppvi 116 hl++++ + lle+ + + n+ n+ + + +s + + ee+p++p v snap_masked-scaffold03271-abinit-gene-0.12-mRNA-1 71 HLGHAFFSTpqnLLEDIRGSPPNMMINQPNPNDES---MMPVRVGADLEEIPKPPVVT 125 99999876634466666666666555554443332...22222455667777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-29	15	73	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MSASSTAFSP DHLSPSEQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNMR 60 GLFIPSANQL HLGHAFFSTP QNLLEDIRGS PPNMMINQPN PNDESMMPVR VGADLEEIPK 120 PPVVTRHVSH WSLQV

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023898877.1	2e-79	axial regulator YABBY 1-like isoform X1
Swissprot	Q01JG2	2e-33	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-33	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A061DU75	2e-67	A0A061DU75_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOX96270	4e-68	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2040	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-34	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]