PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold03804-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 105aa    MW: 11800.7 Da    PI: 10.5417
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold03804-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.5e-314696151
                                            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                                                       kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ
  snap_masked-scaffold03804-abinit-gene-0.10-mRNA-1 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQ 96
                                                       79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.84343103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-284496IPR009057Homeodomain-like
SuperFamilySSF466895.55E-154598IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-214698IPR006447Myb domain, plants
PfamPF002498.5E-104897IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MYHHHQHQGK NVHSSSRMSI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQVILH LQFIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-214696151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-214696151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-214696151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-214696151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-214696252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4272082e-64AM427208.1 Vitis vinifera contig VV78X026806.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929228.13e-64myb-related protein 2-like isoform X1
RefseqXP_023929229.13e-64myb-related protein 2-like isoform X1
RefseqXP_023929230.13e-64myb-related protein 2-like isoform X2
RefseqXP_023929231.13e-64myb-related protein 2-like isoform X2
SwissprotQ9SQQ93e-52PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2K1Y1Q11e-61A0A2K1Y1Q1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05670.12e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.18e-55G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]