PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold04348-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 153aa    MW: 17609.2 Da    PI: 9.7805
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold04348-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.8e-117614199
                                                      TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                                B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                                      ++g +W+vkl  +k++g++++ +GW eF++   L  g  +vFk++g+s f  +v +f++
  snap_masked-scaffold04348-abinit-gene-0.7-mRNA-1  7 PKGTKWKVKL--TKRDGEVWFLNGWCEFARCRALTLGHLLVFKYEGNSHF--YVLIFDA 61
                                                      79********..**********************************9999..**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.971162IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-14461IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-14769IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-8761IPR003340B3 DNA binding domain
CDDcd100171.35E-11760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAFFTIPKGT KWKVKLTKRD GEVWFLNGWC EFARCRALTL GHLLVFKYEG NSHFYVLIFD  60
ATATEIDYSL DDQHQVRRME DIESDDNPLG VMDGFMPSRK TREKPPLPCP LPHKRAKTNP  120
RSSHLQARDT HFRPELTKSK GSVLEKSKMN AGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902233.12e-92B3 domain-containing protein At4g01580-like, partial
TrEMBLA0A2N9FQS46e-58A0A2N9FQS4_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein